PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g16230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 29428 Da PI: 7.1454 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 67 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W+t a g++Rt+k+c++rw++yl Vang11g16230.1 67 RGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 114 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.117 | 62 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-14 | 66 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-16 | 67 | 114 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-21 | 68 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-11 | 69 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-6 | 118 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
HNSTPFSLPF SISISIHRQT QTQPNKQTNQ PLFFFPFDTT LVASPMDEKP RRTCNTLLTD 60 DEIDLRRGPW TVDEDLTLIN YIATHGEGRW NTLALSAGLK RTGKSCRLRW LNYLRPDVRR 120 GNITLEEQLL ILELHSRWGN RLVERIQAAA TATASVATNN AYNSENNIKN NQIEVHNLKD 180 KMGLIEPSLM NNDFVGSYVM QSHTPENSST ALSSSDSFGT QVSTKSDLTD YYSVPQPTRV 240 FASRIGFSIP RSVEPAEWGL V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-15 | 64 | 164 | 24 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g16230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-162 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158818.1 | 1e-103 | hypothetical protein PHAVU_002G184600g | ||||
TrEMBL | V7CKV2 | 1e-102 | V7CKV2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158818.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 7e-40 | myb domain protein 108 |