PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g16000.1

Common Name

LR48_Vigan01g293100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 1047aa MW: 115638 Da PI: 7.776

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g16000.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.7e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl +ak+yhrrhkvC+vhska+v+lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vang11g16000.1 157 VCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 234 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.5E-32	153	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.855	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.27E-37	156	237	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.4E-29	158	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.97E-8	776	934	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.3E-7	818	933	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.00E-8	819	938	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MEAEFGRKNQ YLYGPVLSGM KKAVGNGKMS LEWDLNDWKW DGDLFTAQPL NSVPSDCRSR 60 QFFPPHPEIP AKKANLGNDF SSSLINQGEG KKELEKRRRR VIGEGEGEGM NDEGGSLSLN 120 LGGQGYPFMV EGEEKSGKKT KVIGTTTAAA TISNRPVCQV QDCTADLGNA KDYHRRHKVC 180 DVHSKATVAL VGDVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTVVN 240 EGSHNDGRGS SYLLMSLLRI LTNLHSEYSL CLLYIAANGS DQTRNQDILS HLLRNLESLA 300 APNNDRTLAS LLENSKGLLN AGTPGGAHDE PNLNSNTPEA SRPSGSSIQI DNGFISQDPP 360 ISMAQCETRP TNGGVENLRP PSGDGGIENL RPPSGAPFSS ISQSKGNLPC QLTATETPLR 420 RNNLNNVDLN NVYSDVQNTN ENHKKPYPHV ASEMGSSDLP SWLQCASLKS SPPQTSRNSD 480 STSNQSPSGS SGEAQSRTDR IVFKLFGKDP SNFPLLLRSQ ILNWLSHSPT EIESYIRPGC 540 IILTIYLCLE KSAWEELCCN LGSSLRKLLS SSNDTFWRTG WVFARVQHSV AFLYNGQVVL 600 DVPLCLKSSH HCTISCIKPL AVPASARAHF IVKGCNLSQS STRLLCALEG KYVVHASCHD 660 LIGEADESIQ HLNFSCHIPN VTGRGFIEVE DHCLRSCSFP FIVAEKEVCS EICKLENVIE 720 AAETTNDFQI KNQKMEEKTQ ALHFLQEMGW LLHRSRVKVR LGPTAPIHDL FQFNRFTWLV 780 DFSMDHGWCA VMKKLLDIIF DGGVDAGEQA SIELALLDMS LLHKAVKRNN RPMVELLLRF 840 VPVKTSDGAD SEVKQVDKAS ERFLFRPDTV GPAGLTPLHV AATMRGSENV LDALTDDPGM 900 VGIEVWKSAR DSAGLTPNDY ACLRGYYSYV QLVQRKTNKK GERLHVVDIP GTVADSGIRK 960 QKQSGKVCSL QTEKIESTEM GSNCRVCQQK LVYGGMRTGV VYRPVLLSMV AIAAVCVCVA 1020 LLFKSSPRVY YVFQPFNWES LEYGTI*

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MEAEFGRKNQ YLYGPVLSGM KKAVGNGKMS LEWDLNDWKW DGDLFTAQPL NSVPSDCRSR  60
QFFPPHPEIP AKKANLGNDF SSSLINQGEG KKELEKRRRR VIGEGEGEGM NDEGGSLSLN  120
LGGQGYPFMV EGEEKSGKKT KVIGTTTAAA TISNRPVCQV QDCTADLGNA KDYHRRHKVC  180
DVHSKATVAL VGDVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTVVN  240
EGSHNDGRGS SYLLMSLLRI LTNLHSEYSL CLLYIAANGS DQTRNQDILS HLLRNLESLA  300
APNNDRTLAS LLENSKGLLN AGTPGGAHDE PNLNSNTPEA SRPSGSSIQI DNGFISQDPP  360
ISMAQCETRP TNGGVENLRP PSGDGGIENL RPPSGAPFSS ISQSKGNLPC QLTATETPLR  420
RNNLNNVDLN NVYSDVQNTN ENHKKPYPHV ASEMGSSDLP SWLQCASLKS SPPQTSRNSD  480
STSNQSPSGS SGEAQSRTDR IVFKLFGKDP SNFPLLLRSQ ILNWLSHSPT EIESYIRPGC  540
IILTIYLCLE KSAWEELCCN LGSSLRKLLS SSNDTFWRTG WVFARVQHSV AFLYNGQVVL  600
DVPLCLKSSH HCTISCIKPL AVPASARAHF IVKGCNLSQS STRLLCALEG KYVVHASCHD  660
LIGEADESIQ HLNFSCHIPN VTGRGFIEVE DHCLRSCSFP FIVAEKEVCS EICKLENVIE  720
AAETTNDFQI KNQKMEEKTQ ALHFLQEMGW LLHRSRVKVR LGPTAPIHDL FQFNRFTWLV  780
DFSMDHGWCA VMKKLLDIIF DGGVDAGEQA SIELALLDMS LLHKAVKRNN RPMVELLLRF  840
VPVKTSDGAD SEVKQVDKAS ERFLFRPDTV GPAGLTPLHV AATMRGSENV LDALTDDPGM  900
VGIEVWKSAR DSAGLTPNDY ACLRGYYSYV QLVQRKTNKK GERLHVVDIP GTVADSGIRK  960
QKQSGKVCSL QTEKIESTEM GSNCRVCQQK LVYGGMRTGV VYRPVLLSMV AIAAVCVCVA  1020
LLFKSSPRVY YVFQPFNWES LEYGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	157	231	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	100	KRRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g16000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408201.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A0L9TS57	0.0	A0A0L9TS57_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R984	0.0	A0A0S3R984_PHAAN; Uncharacterized protein
STRING	XP_007154455.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]