PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g15490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20030.4 Da    PI: 10.2158
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g15490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.5e-242169149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie +sn+qvtfskRr+g++KKA+EL++LC++++a+i+fs+  kl+ +
  Vang11g15490.1 21 KKIEKSSNKQVTFSKRRAGLFKKASELCILCNVNIAIIVFSPAEKLFCF 69
                    68*******************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-311372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7261373IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-271483IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-201535IPR002100Transcription factor, MADS-box
PfamPF003197.9E-242269IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-203550IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-205071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDRLKQPQKK KNTGRKKIVI KKIEKSSNKQ VTFSKRRAGL FKKASELCIL CNVNIAIIVF  60
SPAEKLFCFG HPDVEGIVGR YLKGEKVLVA SERRGSYEES NMQYEEAVKN LALEKKNLIE  120
TEKMVKGLSR RWWEDPIDET SERELEQFMV SLYELRKKLT ERAAQLFMLS IQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-161481269MEF2 CHIMERA
6byy_B7e-161481269MEF2 CHIMERA
6byy_C7e-161481269MEF2 CHIMERA
6byy_D7e-161481269MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g15490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410342.11e-123PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A4D6KZH41e-108A0A4D6KZH4_VIGUN; MADS-box transcription factor
STRINGXP_007154693.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-34AGAMOUS-like 62