PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g13300.1
Common NameLR48_Vigan728s004600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 238aa    MW: 26811.3 Da    PI: 6.9171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g13300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-05203225830
                     HHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   8 rErrRRdriNsafeeLrellPka 30 
                      ErrRR+ ++ +fe Lr +lP+ 
  Vang11g13300.1 203 SERRRREILKVSFEALRAILPPE 225
                     6********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAVFMGCKEG EIELGFSNIP QDDIETALKN LFPEDFYMRF QSIDQNPYSS SSSSFIISST  60
NTFNQSINVP GTSHSNFPDV LGVASTQPIS HQPLSQVIPF PSHLPTPEGE HQEMVRALIR  120
VLSSTSQQQL SHQVLPHNSV KHPGAADVVR YIPDMTNPNI EPHTDFNFRR QNLKNTSLVR  180
ERNSTVQATD HISTLQHHFR MISERRRREI LKVSFEALRA ILPPETKVCY NLAMPSM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g13300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410350.11e-167PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0L9TG891e-164A0A0L9TG89_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8331e-166A0A0S3R833_PHAAN; Uncharacterized protein (Fragment)
STRINGXP_007154643.17e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]