PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g12820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 349aa MW: 39815.3 Da PI: 5.4609 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 286 | 318 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Vang11g12820.1 286 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 318 69*****************************87 PP | |||||||
2 | ELK | 29.1 | 2.2e-10 | 239 | 260 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Vang11g12820.1 239 ELKHELKQGYKEKIVDIREEIL 260 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-18 | 74 | 118 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.2E-17 | 76 | 117 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-25 | 127 | 182 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.7E-19 | 132 | 181 | IPR005541 | KNOX2 |
Pfam | PF03789 | 7.7E-7 | 239 | 260 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 239 | 260 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 239 | 259 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.564 | 259 | 322 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 261 | 325 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-10 | 261 | 326 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-10 | 262 | 323 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 266 | 323 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.9E-18 | 279 | 318 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAFQDHLQHE IAFQRFTEEQ ELSEGRDMQQ RLPPTWLNSV NAAQQRQQNF LDGAAEKSVD 60 RNRGESNCES EDLREYKADI LGHPLYDQLL SAHVSCLRIA TPVDQLPRID AQLQQSQRVV 120 EKYSALANNG VVDEKELDQF MTHYVLLLCA FKEQLQQHVR VHAMEAVMAC WDLEQSLQSL 180 TGVSPGEGTG ATMSDDEDDQ AESNGNLYEG SFDGGESLGF SPLVPTETER SLMERVRHEL 240 KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSLLKAWW QAHSKWPYPT EEDKARLVQE 300 TGLQLKQINN WFINQRKRNW HTNNPSSSSN TKTKRKSSAG ESSNQSFM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g12820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411600.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | P48000 | 1e-162 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0S3R6S6 | 0.0 | A0A0S3R6S6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155117.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-155 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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