PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g12580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 115aa MW: 12947.3 Da PI: 4.6099 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.5e-09 | 10 | 38 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g W +eEd l ++vk++G+g W++I++ Vang11g12580.1 10 KGFWNAEEDSVLTNYVKKHGTGKWNRIPK 38 688************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 4 | 39 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.911 | 5 | 69 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.21E-8 | 6 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 11 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-5 | 13 | 39 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEAYENESKK GFWNAEEDSV LTNYVKKHGT GKWNRIPKVT AEGDCNSASS MERSGEGEKL 60 VHECWSDDLM ELGNMHEGIM RDDFGCSFSF PNSVFDLCTS PYCTQSFHHS FFAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g12580.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-123 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419051.1 | 1e-51 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A0L9TQV0 | 2e-50 | A0A0L9TQV0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R6G4 | 2e-50 | A0A0S3R6G4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155422.1 | 5e-29 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-10 | myb domain protein 66 |