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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g11470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 458aa MW: 49632.7 Da PI: 8.2563 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.3 | 1.9e-39 | 104 | 164 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Vang11g11470.1 104 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 164 78999*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 97 | 161 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-32 | 105 | 162 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 108 | 162 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 110 | 146 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MYMFTSLSCL KPVFSVGTIL LSSKSVLIIR YVTDAGVENV TEEDLEADPS PSAGETKDSG 60 TSPEAIVNPK TPSIEEETAK SKADKSEKEQ GDAANSQEKT LKKPDKVLPC PRCKSMDTKF 120 CYYNNYNVNQ PRYFCKACQR YWTAGGTMRN VPVGAGRRKN KNSASHYRHI SISEALQAAR 180 IDSPNATHLP PLKGNGRVLS FGLDAHAPIC DSMASVLNLG EKKVPDSTTN GFQHGFEDQR 240 LPIPRKSGEN GDDSSNTSSI TVSNSMGESS KSTFQPQPVL QHHGFLPQLP CVPWPYTWNS 300 PVPPPALCPS GYALSFYPPA TFWNCGMPGN WNVPWFSSLS SASNPNSPGS APNSPTLGKH 360 SRDGDMIKQD SLHKEEASRP RNGGVLVPKT LRIDDPNEAA KSSIWATLGI KNESVSGAGM 420 FKAFQSKKEE KNHVEASPVL MANPAALSRS LNFHENS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g11470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017408299.1 | 0.0 | PREDICTED: cyclic dof factor 3-like isoform X2 | ||||
Swissprot | Q8LFV3 | 1e-111 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A0L9TRX6 | 0.0 | A0A0L9TRX6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7S5 | 0.0 | A0A0S3R7S5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155301.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-104 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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