PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g10380.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 294aa MW: 32027.2 Da PI: 9.1547

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g10380.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	82	126	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Vang11g10380.1 82 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 126 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.262	75	131	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-17	77	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-17	78	129	IPR006447	Myb domain, plants
SMART	SM00717	3.9E-10	79	129	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-11	81	126	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-12	82	126	IPR001005	SANT/Myb domain
CDD	cd00167	7.98E-10	82	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSRACAATDS VASGEIMLFG VRVVVDSMRK SVSMNNLSQY EHRHDANNNN KDVLAVGYAS 60 ADDAVPHNTG RHRERERKRG VPWTEEEHKL FLVGLQKVGK GDWRGISKNY VKTRTPTQVA 120 SHAQKYFLRR SNLNRRRRRS SLFDITTDMV SAIPMEEEQV QNHDTLFHPQ AVCPAVPETS 180 KSGIPMMPVY QFGIGSGAIA VQGGKPLEEL TLGQGNIEPN VPINLVRVIP VVADPKASTV 240 SDIITPSSSS ALDPPTLSLG LAFSSDQRQT SSRHSALHAM PCFSNGDSII SVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g10380.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418067.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	4e-70	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0S3R7S9	0.0	A0A0S3R7S9_PHAAN; Uncharacterized protein
STRING	XP_007155372.1	1e-173	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	6e-57	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]