PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g09140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 519aa    MW: 59441.3 Da    PI: 7.2425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g09140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-0786108326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C ff+  G+C+ Gd+C+F Hg
  Vang11g09140.1  86 MVPCYFFFN-GFCNKGDKCSFLHG 108
                     689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.549635IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-11761No hitNo description
SMARTSM003560.002734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.0523763IPR000571Zinc finger, CCCH-type
SMARTSM003560.753962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-683108IPR000571Zinc finger, CCCH-type
SMARTSM003560.001183109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.10383110IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-486108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-688111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDEDSLKRNT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWVSGQ CLNPTCAFRH  60
PPLDGHTGVP APSEPAQISL PANKTMVPCY FFFNGFCNKG DKCSFLHGSD DSIFTVKPVK  120
NDNGSTDARN LENKTSSGNG TGVASVPTHQ SLTIPKHLSD FKRQPKEKLQ LSKNVKQQGD  180
SLVISASEYK EAAVSRSDSP FPDDGFVHNV SHLRTERSSE EQVNSQIEPE ERWESSPHSP  240
GFDVLVHNEL ENLGYEEDSE YLPVLDRNEQ ELNEQYLGYE FKDPVEYDTM CPEADILYPQ  300
ETYDGYRCFD SDLTHGNGRT VRTYSRDIFL DSIFSRKRIR MSAEVAAYDN NLDLRDHLRR  360
RRENNGPPIA GFLRRQESSS LMIRNQERHQ RPGIEQRPSR LTSQLGYSAI DSIGEVETLS  420
IANKHRLFRR SQQHKPRKHY REKPAKRPFL SSKISRKPVF KQRGFVEEST AFSGPKTLAE  480
IREEKKKAEE GLHWKRPSTD FQDPKPLSEI LKDKRTMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g09140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422652.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A0S3R6Z20.0A0A0S3R6Z2_PHAAN; Uncharacterized protein
STRINGXP_007154984.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823