PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 446aa    MW: 51004.4 Da    PI: 7.0537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-18190236148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll+++v q+G + W+ Ia+ ++ gR +kqc++rw+++l
   Vang11g08030.1 190 KGQWTSDEDRLLIQLVDQYGVRKWSHIAQALP-GRIGKQCRERWHNHL 236
                      799*****************************.*************97 PP
2Myb_DNA-binding58.51.5e-18243284245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   Vang11g08030.1 243 DMWTEEEDKILIQAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 284
                      67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.627185240IPR017930Myb domain
SuperFamilySSF466894.93E-32187283IPR009057Homeodomain-like
SMARTSM007171.9E-16189238IPR001005SANT/Myb domain
PfamPF002491.6E-16190236IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-28191244IPR009057Homeodomain-like
CDDcd001675.26E-15193236No hitNo description
PROSITE profilePS5129421.731241291IPR017930Myb domain
SMARTSM007171.9E-16241289IPR001005SANT/Myb domain
PfamPF002493.4E-17243284IPR001005SANT/Myb domain
CDDcd001675.07E-14245287No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22245289IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDIQGNLTEN QASQPMHVQE NCLKPSMEDQ LPFGVPSSQG FLQDFHHIDH FPVNDGSSSN  60
PIFLQHTPNF DPFDHNVNCE SAPPDFEVFE CKPFAESNGS AHVHLMHNFQ YVGYSLNLPR  120
TNQLDMVVAN QRFLPFSALE TKPLNFVAPD EISCISPPKF YKKVGLNKNL RESSSTRRTF  180
KARKKSNIVK GQWTSDEDRL LIQLVDQYGV RKWSHIAQAL PGRIGKQCRE RWHNHLRPDI  240
KKDMWTEEED KILIQAHAEI GNKWAEIAKK LPGRTENSIK NHWNATKRRQ YSKRKCRSKY  300
PRGSLLQEYI KSLNLDQNPP MDYRKKSVKN ANPKTNNNGK AAAELLCGDQ FCSNGQLVTK  360
YDFNEVPDFC LDDNLFEEGC SIDSLLDDIQ SASTMDDKDF DGKVQCAPTV EGKQSHHHHT  420
EITMGIEVKK ELDLVEMMSH HVNEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-451882902104C-Myb DNA-Binding Domain
1msf_C1e-451882902104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419008.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L25e-93MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0S3R6580.0A0A0S3R658_PHAAN; Uncharacterized protein
STRINGXP_007155438.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-95myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]