PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g07060.1
Common NameLR48_Vigan01g223400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 647aa    MW: 71745.9 Da    PI: 6.2324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g07060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.61.8e-1262616301373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL+ c++a+ s++ +++++++a+l +lasp+g+p+ R+ ayfteALa r++r +++++++ ++s++   + +e+ +al+l+++v+Pi+k  h
  Vang11g07060.1 261 LVSLLTGCVDAIGSRNVAAINQFIAKLGDLASPRGTPISRICAYFTEALAIRVTRLWPHVFHITTTSRDM-VEDDETGTALRLLNQVTPIPKYIH 354
                     6899*********************************************************988777765.567888899*************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++
  Vang11g07060.1 355 FTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPHPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVR 444
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                     l++L+vk++E++aVn++lqlh++l +    +   +++L l++s++P+vvvv+eqea+hn++++ +r++++l+yysalfd++ e+++++es  r+k
  Vang11g07060.1 445 LWMLHVKEQETVAVNCILQLHKTLYDGSGGA--LRDFLGLIRSTNPNVVVVAEQEAEHNEARLEARVCKSLKYYSALFDCIeESGVAQESAVRVK 537
                     ***********************95543333..589*********************************************9999********** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaW 373
                     +E++  grei+n+vaceg+er erhe+++kWr++l e+ G++ + +se++++q +lll++++ + y+v+    e    ++l W ++pL++vSaW
  Vang11g07060.1 538 IEEM-YGREIKNMVACEGRERLERHESFGKWRRMLvEQGGLRCLGVSEREMSQSQLLLKMYSCENYSVKkveiEGATGVTLSWLEQPLYTVSAW 630
                     ****.9**************************99835689**********************888***965544477778************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.825235607IPR005202Transcription factor GRAS
PfamPF035146.1E-124261630IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLAGCSSSTL LSPSHRLRSE APAPFQACHF PRPSMSTQRL DLPCSTFTRK DGSSRSQPLR  60
PVGLSVEKPI EAKTSTCSLK HNIRLPPLAI TAAAPLVEES IKDKSLKRLA EHDESFTNVP  120
KRKKGITEFD NSGDNFWFQP GVEGNTLGGL NNTSLAFSPE EETVCFVPSE LVSHSAPFPL  180
NPWLESCVTK ITNFGEGSHR PRQHHNDHAT EGSVSNASSE SQSLRLNENA SDHEVGNGSG  240
NPYHHHEVET GEEDDHHGLE LVSLLTGCVD AIGSRNVAAI NQFIAKLGDL ASPRGTPISR  300
ICAYFTEALA IRVTRLWPHV FHITTTSRDM VEDDETGTAL RLLNQVTPIP KYIHFTSNEM  360
LLRAFEGKDR VHIIDFDIKQ GLQWPSLFQS LASRPHPPSH VRITGIGESK QELNETGDRL  420
AGFAEALNLP FEFHPVVDRL EDVRLWMLHV KEQETVAVNC ILQLHKTLYD GSGGALRDFL  480
GLIRSTNPNV VVVAEQEAEH NEARLEARVC KSLKYYSALF DCIEESGVAQ ESAVRVKIEE  540
MYGREIKNMV ACEGRERLER HESFGKWRRM LVEQGGLRCL GVSEREMSQS QLLLKMYSCE  600
NYSVKKVEIE GATGVTLSWL EQPLYTVSAW VPVDVAGTSS SFSHPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6625263210380Protein SCARECROW
5b3h_A2e-662526329379Protein SCARECROW
5b3h_D2e-662526329379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g07060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412257.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0L9TQ120.0A0A0L9TQ12_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5K60.0A0A0S3R5K6_PHAAN; Uncharacterized protein
STRINGXP_007155560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]