PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g05040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 358aa    MW: 39646.6 Da    PI: 8.4132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g05040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13184231355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  l+P +     kK +Ka++Le A++Y+k+Lq
  Vang11g05040.1 184 QDHVIAERKRREKLSQRFIALSALVPGL-----KKTDKATVLEDAIKYVKQLQ 231
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-11184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-13186235No hitNo description
SMARTSM003531.4E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTQISSTVYL PDFGMEDPTL FHQYPMDSFP FQLDDFDFES FSASPKGSSS HKRLSSESTQ  60
NSSLTQSPET SVAPPRPTKQ PKTTMSTWSA YGTDMIAPKA ASSSSSKIIS FDKSSASSVS  120
SQQPYKLDDA KLLKKPKIET GYGENLDFSA VASQSFYDNN SFLDYDKQEK KAAVTMARNP  180
TQAQDHVIAE RKRREKLSQR FIALSALVPG LKKTDKATVL EDAIKYVKQL QERVKILEEQ  240
SVDKTVESAI FVKRSVVFSG DDSTYSGENS DQSLPEIEAR ISGKEVLVRL HCDKHSGRTA  300
AILRELEKHN LTVQSSSFLP FGNNTLDVTI VAKMGKDYCL TAKNLIRSLS QCLRQLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g05040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428810.10.0PREDICTED: transcription factor bHLH18-like isoform X2
RefseqXP_017428813.10.0PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLA0A0S3R5E30.0A0A0S3R5E3_PHAAN; Uncharacterized protein
STRINGXP_007155781.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-54bHLH family protein