PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g04950.1
Common NameLR48_Vigan01g200500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 321aa    MW: 35950.3 Da    PI: 7.0256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g04950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
   Vang11g04950.1 14 RGPWSPEEDAKLKSYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.65.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   Vang11g04950.1  69 GGFSEEEDNIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.489962IPR017930Myb domain
SuperFamilySSF466891.55E-2611109IPR009057Homeodomain-like
SMARTSM007175.4E-131364IPR001005SANT/Myb domain
PfamPF002493.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-251569IPR009057Homeodomain-like
CDDcd001677.00E-101662No hitNo description
PROSITE profilePS5129421.29763117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002491.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2370117IPR009057Homeodomain-like
CDDcd001671.50E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKILGK  120
QRKEHHAQAR RVGGLKQEIK RESEDLMLPV GVISRTPHWP HEQNSWPIPV ANAYCDLNNQ  180
TSPIVHIPDT TVTATMNSQY SSFDISLTQD QLYPSTVNTI TTDTCHTSNV FQGFGNFSSD  240
LACVDPQHID GSSERLFYGM ESMEIGNGST NTTSTESTSW GDISSLVYPP LVSHYESCQQ  300
RILPQEVTFD GSSYFAMQTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g04950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433691.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y91e-89RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0L9TQM90.0A0A0L9TQM9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5070.0A0A0S3R507_PHAAN; Uncharacterized protein
STRINGXP_007155794.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-80myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]