PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 37023.5 Da PI: 9.0088

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g04930.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	208	262	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Vang11g04930.1 208 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTK 262 788899***********************************************98 PP
2	HD-ZIP_I/II	123.8	7.9e-40	208	297	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Vang11g04930.1 208 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 297 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-17	184	265	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.29E-18	198	265	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	204	264	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	206	268	IPR001356	Homeobox domain
Pfam	PF00046	5.8E-16	208	262	IPR001356	Homeobox domain
CDD	cd00086	4.04E-16	208	265	No hit	No description
PROSITE pattern	PS00027	0	239	262	IPR017970	Homeobox, conserved site
SMART	SM00340	2.8E-25	264	307	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.6E-10	264	298	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
LPPQKVTFIL FPLPLFSINT LLLPPITLYK PHHHLIIIKT KPLSIPFLLS HTYSFHHLMM 60 GLHQDPTDSG LQLILGLALT STPEDIITPS PPSILHHHHL TTHRPNSYSS KSSFISPSNS 120 EPEPSLTLGL SRETYPQQVV KLPRNIPHNK LSSEDPLEQT SPHSAISSFS GGRVKRERDL 180 SCEEVDATET ERVSSRASDE EEDGTTARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA 240 KQLSLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE LQELKALKLA 300 QPLYMPMSAA TLTMCPSCER LGGGVVKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	264	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g04930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421569.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-80	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0S3R564	0.0	A0A0S3R564_PHAAN; Uncharacterized protein
STRING	XP_007155789.1	1e-169	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-66	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]