PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g04720.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21370 Da PI: 10.5127 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.6e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Vang11g04720.2 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.774 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.21E-15 | 2 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.22E-17 | 6 | 57 | No hit | No description |
SMART | SM00526 | 6.8E-8 | 109 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 17.564 | 118 | 191 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.4E-12 | 124 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.92E-12 | 124 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.0E-8 | 127 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRSLPAPK IDNNHMALST VVHHDEVLDT KPLAVSGGPL QSPSFKEQIS 120 RLVDNHILEA IVNMKEQKGS DKGAIISYME EKYRCPPNIS KLLSTKLKHM VASGKIIKMV 180 WTRDQLLAEL T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g04720.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-117 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407588.1 | 1e-131 | PREDICTED: telomere repeat-binding factor 2 isoform X2 | ||||
Swissprot | Q9FJW5 | 2e-59 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A0L9TPN4 | 1e-129 | A0A0L9TPN4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155823.1 | 1e-120 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 8e-62 | MYB_related family protein |
Publications ? help Back to Top | |||
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