PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g04720.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 192aa    MW: 21370 Da    PI: 10.5127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g04720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
   Vang11g04720.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774161IPR017930Myb domain
SuperFamilySSF466893.21E-15266IPR009057Homeodomain-like
SMARTSM007174.1E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-13456IPR009057Homeodomain-like
PfamPF002491.5E-7555IPR001005SANT/Myb domain
CDDcd116601.22E-17657No hitNo description
SMARTSM005266.8E-8109182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150417.564118191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.4E-12124178IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.92E-12124178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.0E-8127178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRSLPAPK IDNNHMALST VVHHDEVLDT KPLAVSGGPL QSPSFKEQIS  120
RLVDNHILEA IVNMKEQKGS DKGAIISYME EKYRCPPNIS KLLSTKLKHM VASGKIIKMV  180
WTRDQLLAEL T*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g04720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-117AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407588.11e-131PREDICTED: telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW52e-59TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0L9TPN41e-129A0A0L9TPN4_PHAAN; Uncharacterized protein
STRINGXP_007155823.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.28e-62MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]