 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang11g04540.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
LBD |
| Protein Properties |
Length: 246aa MW: 26977.9 Da PI: 8.91 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang11g04540.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 98.1 | 8.8e-31 | 17 | 118 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C++C+vlr++C+++Cvl+p++ ++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
Vang11g04540.1 17 SCNGCRVLRKGCSESCVLRPCLqwietSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 111
6*********************9998777889*************************************************************** PP
DUF260 91 kaelall 97
++e++l+
Vang11g04540.1 112 AVETVLR 118
*998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MRGNTEPRTP KTKIGMSCNG CRVLRKGCSE SCVLRPCLQW IETSEAQGHA TVFVAKFFGR 60
ADLMSFISNV PENQRPALFQ SLLFEACGRT VNPVNGAVGL LWTGNWHVCQ AAVETVLRGG 120
TLRPMPELMG LASPAADETS EVACSDIWRI RDPNPTCGFT NTRSHTRVSS ASKRKRLEEP 180
AKLQAAPNLD LRLTPIFLQK KVENRRPVSP SMTSEESGTT TACLESKFGD QWGHSGDRKV 240
LNLFI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
