PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g04220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 26538.1 Da PI: 8.2325 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 29 | 71 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Vang11g04220.1 29 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 71 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.921 | 22 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 25 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-14 | 26 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-14 | 27 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-12 | 29 | 72 | No hit | No description |
Pfam | PF00249 | 9.1E-15 | 29 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSRGRRDDLC KGNNLRMDAC PITAVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLSGRT 60 DNAIKNHWNS TLKRKCASIM IAEDPAAAAA GFSPQPLKRS FSAGAALPPG SPSGSDVSET 120 SAPGVVSPSH VFRPVAVRPV VETASSCDDG PTTSLSLSLP GVESSETSNR AGAMQANPFT 180 MAPVTTVASP AAEVGMGALN LSAEFMAVMH EMIKKEVRSY MEQQSAMCFQ GVDGFRNVSV 240 KRIGISRVDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mbj_A | 5e-18 | 25 | 75 | 1 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 5e-18 | 25 | 75 | 1 | 51 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g04220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421298.1 | 1e-163 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-50 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0L9TPG6 | 1e-162 | A0A0L9TPG6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4V6 | 1e-162 | A0A0S3R4V6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155887.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-52 | myb domain protein 73 |
Publications ? help Back to Top | |||
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