PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 454aa    MW: 51538.6 Da    PI: 6.8366
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1989179199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v +  ++ lp +f+++h  +  +++t++ledesg++++ k+i +k++    l++GW++F   ++L+egD vvF+l++ ++f  +v 
  Vang11g03810.1  89 FVKSLVRSHVASCFWMGLPVSFCKRHLPD--KDTTIILEDESGKEYNTKFIACKTG----LSAGWRQFSAVHKLQEGDAVVFQLVEPTKF--KVY 175
                     89************************534..5679***************777776....***********************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Vang11g03810.1 176 IIRA 179
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-2281180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2483180IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-2687178No hitNo description
PROSITE profilePS5086313.70489180IPR003340B3 DNA binding domain
PfamPF023621.1E-1689179IPR003340B3 DNA binding domain
SMARTSM010199.7E-2589180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
LKMVVTDERN RDRANRRDVV ELTQYDQAVT VAYYGEELHG GATCAEAQKF SSSMKAAVEG  60
TSSRGEVMSS AVLQAEEVQS NLRPEFPSFV KSLVRSHVAS CFWMGLPVSF CKRHLPDKDT  120
TIILEDESGK EYNTKFIACK TGLSAGWRQF SAVHKLQEGD AVVFQLVEPT KFKVYIIRAN  180
NTRELDGAFL NFDSCTKQQK MGGKTCKDNM DTDLTCNSSK RKHGKSVPLD IQKKKKANLS  240
RLRPKVMPSV EQPEDGSEEA LSEVMEEFRM LEFEDVRGFE NFSIIVDGVS IDAEFPDDVR  300
NKYYRLCCSQ HAFLHENLIK GMNYKLVAGI ISETVNIADA IKVSMLCTPR FEFVNWDKTL  360
LAFEHLGMNV EFLRIRLRRL VSIAYEENDV SEVKKYLASR NEYSRADDEI RNIEEKLEEL  420
KGACNGFGAY IGSLKGKAEN YHNKFRREVH APW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219235KRKHGKSVPLDIQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409560.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A0S3R4Y90.0A0A0S3R4Y9_PHAAN; Uncharacterized protein
STRINGXP_007155931.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-35B3 family protein