PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 363aa MW: 40580.8 Da PI: 7.2795

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g03540.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	227	282	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v gLt+++vkSHLQkYRl+ Vang11g03540.1 227 KQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLH 282 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.499	224	284	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-29	225	285	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.12E-18	225	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-26	227	282	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	229	280	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MELSLDLSLA FVPGRTVRQI LGEVAQNEGG SQRMATLEDF LLKLEDEKRK IESFKRELPL 60 CMVLVNDAVT KLKEEINGGV RMQEGPVVEE YMPLLKTNSE GSETLNMGKE RSNMKNWMNS 120 VRLWNVESKP RTEEDDRCVP HNPNQPQNET NKSRGAAAAL NGNNCVLKTV MSEDKRVSQA 180 PSHGLMRPVF ESNDRKAESS NEHGSSLITT STLEIKGQAQ PQQNPRKQRR CWSPELHRRF 240 VDALQQLGGP QVATPKQIRE LMQVVGLTND EVKSHLQKYR LHFRRPQVCS VEVANGGLCL 300 MVKDKHGDNN KSKGNLSQSG SPQGPLFLGG SGRNSMDTEE DEQSDCHNWK GALHHQPEAE 360 LL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MELSLDLSLA FVPGRTVRQI LGEVAQNEGG SQRMATLEDF LLKLEDEKRK IESFKRELPL  60
CMVLVNDAVT KLKEEINGGV RMQEGPVVEE YMPLLKTNSE GSETLNMGKE RSNMKNWMNS  120
VRLWNVESKP RTEEDDRCVP HNPNQPQNET NKSRGAAAAL NGNNCVLKTV MSEDKRVSQA  180
PSHGLMRPVF ESNDRKAESS NEHGSSLITT STLEIKGQAQ PQQNPRKQRR CWSPELHRRF  240
VDALQQLGGP QVATPKQIRE LMQVVGLTND EVKSHLQKYR LHFRRPQVCS VEVANGGLCL  300
MVKDKHGDNN KSKGNLSQSG SPQGPLFLGG SGRNSMDTEE DEQSDCHNWK GALHHQPEAE  360
LL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g03540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410297.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X1
TrEMBL	A0A0L9TG55	0.0	A0A0L9TG55_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R4E7	0.0	A0A0S3R4E7_PHAAN; Uncharacterized protein
STRING	XP_007155959.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	5e-48	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]