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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g03510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 30206.8 Da PI: 8.6864 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 69.9 | 3.8e-22 | 32 | 66 | 26 | 60 |
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+ Pr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Vang11g03510.1 32 LELPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 66 678******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 16.647 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-13 | 19 | 65 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-17 | 22 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSFGRAVALS FSYYTCRDNQ LYTYFHVTSP HLELPRHFCK TCRRYWTKGG ALRNVPIGGG 60 CRKNKNIGVA NSVAKTASTK MKAVASELGK SPGFGGFEVE HELPPPSQIL WGSPQNTHLL 120 ALLRATQNQN PNPNPSPMSI KEEGTLIGHM VSTEPLVSNA LLNHRILGYD AVAQVPSLGL 180 FGRSNQDQQQ NGGFLLGEHH NSGIHEIYQK LRSSSANNYC GDNSSQVFMG NMASNYSSSV 240 SNNIMETTSV AGGEFGYWNG PTFSWSDLPT TNGAGAYP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g03510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027922088.1 | 1e-169 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A0L9TG66 | 1e-179 | A0A0L9TG66_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155971.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7219 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 3e-17 | DNA binding with one finger 2.4 |