PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03510.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 279aa    MW: 30206.8 Da    PI: 8.6864
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof69.93.8e-2232662660
          zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                    l+ Pr+fCk+CrryWtkGGalrnvP+Ggg+rknk+
  Vang11g03510.1 32 LELPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 66
                    678******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.6471266IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-131965IPR003851Zinc finger, Dof-type
PfamPF027016.3E-172266IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSFGRAVALS FSYYTCRDNQ LYTYFHVTSP HLELPRHFCK TCRRYWTKGG ALRNVPIGGG  60
CRKNKNIGVA NSVAKTASTK MKAVASELGK SPGFGGFEVE HELPPPSQIL WGSPQNTHLL  120
ALLRATQNQN PNPNPSPMSI KEEGTLIGHM VSTEPLVSNA LLNHRILGYD AVAQVPSLGL  180
FGRSNQDQQQ NGGFLLGEHH NSGIHEIYQK LRSSSANNYC GDNSSQVFMG NMASNYSSSV  240
SNNIMETTSV AGGEFGYWNG PTFSWSDLPT TNGAGAYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922088.11e-169dof zinc finger protein DOF5.7-like
TrEMBLA0A0L9TG661e-179A0A0L9TG66_PHAAN; Uncharacterized protein
STRINGXP_007155971.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-17DNA binding with one finger 2.4