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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vang11g02540.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
SRS |
| Protein Properties |
Length: 234aa MW: 26148.9 Da PI: 7.676 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang11g02540.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 202 | 1.8e-62 | 100 | 234 | 3 | 149 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
+g++sCqdCGnqakkdC h+RCRtCCksrg++C+thvkstWvpa+krrerqqqla ++++++ ++++ skr+r+ +++t+l+s+e
Vang11g02540.1 100 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAVLQEQQQ--QQRDLSKRPRDP-------TACTRLPSSE-- 183
6889****************************************************976664..467778888875.......7788888774.. PP
DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149
le ++P+ vss+a frcvrvs v+d+++ +aYqtav+igGh+fkGiLyd
Vang11g02540.1 184 -GLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYD 234
.679999********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MAGLFSLGGG RGSNNNQQDN TTNNEIPAAE TLFWYSKTDD VSSYRGFELW NQQQEQHVMP 60
PHARPLLQRD LYSSGVGPSR GVSDDHSSSR SAFVAMRAAE GGISCQDCGN QAKKDCPHMR 120
CRTCCKSRGY ECQTHVKSTW VPASKRRERQ QQLAVLQEQQ QQQRDLSKRP RDPTACTRLP 180
SSEGLEEGHF PSVVSSPAEF RCVRVSCVED ADDRYAYQTA VNIGGHLFKG ILYD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 3e-56 | Lateral root primordium (LRP) protein-related |
