PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang11g02320.2 | ||||||||
Common Name | LR48_Vigan01g179700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 205aa MW: 22653 Da PI: 8.2183 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.1e-07 | 18 | 48 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++ fC ++ lC+ C + H Vang11g02320.2 18 TLCDACESAAAIVFCAADEAALCRACDKKVH 48 57*************************9998 PP | |||||||
2 | zf-B_box | 31.2 | 4.4e-10 | 67 | 107 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H+ Vang11g02320.2 67 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtHE 107 5799**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.826 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-9 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-5 | 18 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.74E-6 | 18 | 60 | No hit | No description |
SuperFamily | SSF57845 | 9.39E-6 | 63 | 102 | No hit | No description |
SMART | SM00336 | 1.2E-11 | 66 | 111 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.527 | 66 | 111 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-8 | 67 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.96E-8 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MQNNTPSNSK PSTSIMRTLC DACESAAAIV FCAADEAALC RACDKKVHMC NKLASRHVRV 60 GLASPSDVPR CDICENAPAF FYCETDGSSL CLQCDMIVHV GGKRTHERYL LFRQRVEFPG 120 EKPGKSENPA SQPLDPSETK RGQNALPKIK MGEKQQNHRM PLILTQEPNA DEHAMMGTKM 180 IDLNMKPQRI HEPTSNNQVR MPGK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang11g02320.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-146 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435637.1 | 1e-152 | PREDICTED: B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 3e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0L9TP53 | 1e-151 | A0A0L9TP53_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R430 | 1e-151 | A0A0S3R430_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156118.1 | 1e-136 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-76 | DBB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|