PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 22896.3 Da PI: 9.7182

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g01840.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.2	1.6e-21	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krienk+nrqvtfskRr+g+lKKA+E+SvLCdae Vang11g01840.1 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAE 42 79******************************97 PP
2	K-box	14.1	2e-06	41	66	12	38
K-box 12 akaeslqqelakLkkeienLqreqRhl 38 a + +++ e+++Lk++i+ Lqr++R + Vang11g01840.1 41 A-EGNWTIEYTRLKAKIDLLQRNHRYI 66 4.679*******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.488	1	42	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-19	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.7E-22	1	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-17	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-18	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEGNWTIEYT RLKAKIDLLQ 60 RNHRYIIEDS CTLLALYGRR FRFNEPKRAS ESGAANQLMY ESISELQKKV FAQILSHLYE 120 KVIQEQNNML AKKIKEKEKV AAQQAQWDHP NHGVNASFLL PQPLLNMGGN YREEAPEVGR 180 NELDLTLEPL YSCHLGCF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g01840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB588744	1e-119	AB588744.1 Vigna unguiculata VuAP1 mRNA for APETALA1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507468.1	2e-97	truncated transcription factor CAULIFLOWER A-like
Refseq	XP_020229986.1	2e-97	truncated transcription factor CAULIFLOWER A
Swissprot	Q6E6S7	6e-71	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A0L9TN64	4e-99	A0A0L9TN64_PHAAN; Uncharacterized protein
STRING	GLYMA16G13070.1	8e-96	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF588	32	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-47	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]