PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 476aa MW: 52615.6 Da PI: 7.6116

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g01040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.4e-39	120	179	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+g+rknk+s Vang11g01040.1 120 PDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHS 179 78999*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	117	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	121	178	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MSQVRDSAIK LFGADIHTTH TPIKPTTPFP DLHSLTRIQP LLQPIIVMNG LEESVNDEVD 60 VPLKEEVSSK QIDPQEDGND TPRDICKNPT LKLVGKVVHR TNEHRNAKRN IDQEKVFKKP 120 DKVLQCPRCN SLETKFCYFN NYNVNQPRHF CKNCQRYWTA GGAIRNVPVG AGKRKNKHSA 180 LQYYQKPVTP DGESAIQTHS SGSSDDMILS SNELSVTSRP IREREENPLS ESVETVLSLN 240 GQRKFDVDFS TVKDDGEDPS SSSMRSNEME QVGLAQHFNG LIPLHSFHYH PVPSWSYQWN 300 PCWNVKEFRS SSTSYTGSPT MMAVSGFSIP TVMPPAAPYS YSGFMSNLAG QEEESSLIGS 360 AFSGISLSSS SVSNSTSSGN TSPALGKHSR DGSTPKEGAM KQNLWVPKTV RINGPEEAAN 420 SSIWTTLGTK SEQNKIIIKG SVFKSFESKT SADDNQIRRT NPAAFSRSES FQESM*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MSQVRDSAIK LFGADIHTTH TPIKPTTPFP DLHSLTRIQP LLQPIIVMNG LEESVNDEVD  60
VPLKEEVSSK QIDPQEDGND TPRDICKNPT LKLVGKVVHR TNEHRNAKRN IDQEKVFKKP  120
DKVLQCPRCN SLETKFCYFN NYNVNQPRHF CKNCQRYWTA GGAIRNVPVG AGKRKNKHSA  180
LQYYQKPVTP DGESAIQTHS SGSSDDMILS SNELSVTSRP IREREENPLS ESVETVLSLN  240
GQRKFDVDFS TVKDDGEDPS SSSMRSNEME QVGLAQHFNG LIPLHSFHYH PVPSWSYQWN  300
PCWNVKEFRS SSTSYTGSPT MMAVSGFSIP TVMPPAAPYS YSGFMSNLAG QEEESSLIGS  360
AFSGISLSSS SVSNSTSSGN TSPALGKHSR DGSTPKEGAM KQNLWVPKTV RINGPEEAAN  420
SSIWTTLGTK SEQNKIIIKG SVFKSFESKT SADDNQIRRT NPAAFSRSES FQESM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g01040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424826.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A0L9TNP4	0.0	A0A0L9TNP4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R445	0.0	A0A0S3R445_PHAAN; Uncharacterized protein
STRING	XP_007156312.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-53	cycling DOF factor 2

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]