PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g00200.1

Common Name

LR48_Vigan01g176800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 745aa MW: 82478.5 Da PI: 6.1884

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g00200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.7e-08	54	96	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + Vang11g00200.1 54 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 96 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-10	46	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-5	49	99	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.416	50	101	IPR017884	SANT domain
SMART	SM00717	2.7E-6	51	99	IPR001005	SANT/Myb domain
CDD	cd00167	6.69E-6	54	97	No hit	No description
Pfam	PF00249	5.1E-6	54	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MEAEAQISHD SNTQFQPEPV VSVQKGDPGV SSSVANAVIP QQPATKKPTR QWAAWTRQEE 60 ESFFTALRQV GKNFEKITSR VQSKNKDQVR HYYYRLVRRM NKLLGPGLCL DAKNSKDTNA 120 AMLRWWSLLE KYSCKASKLH LKPRRFKIFL EALEHQLLKD RKKNVRKRPL QGGNCLPPVP 180 TTVSNQGRAS GNEARAVKLV LVDSQNILKL GPSKSSMKRN INMGVSRSNT KGDSNTMKST 240 RQRKKSGMIS TAAYRKWEKA AIAGVSLVAD AAEHLERAAT VREIEQDQEN PGEKCSDPTD 300 YVLPSLPSCP QNQFVDNNVN SMKLKLQLFP IDEPTRRALE VRWSQESTLS AADIYAMIGS 360 PPIFRLRYGW FSNSELGLLN MQVPVASGSI LTQSKXSVYN SKDQIVNSVS FPTAAANAHS 420 MELSEGCRIS MNRNHTLMTS SPGVPNTRGN SXYLNTSSEE SRHPTANTLW HXKDVGDEAV 480 TTQLEDLEEL KLSSGTGLSA GEWADSLTNI SVGDLLSGVS QDLEDDCINP PIADNCHDVQ 540 QVPFSSDSFD AAIAAHISRH QDKMGQSTLV AHMSSIWDAE ETCDAFIFRR DHILHADRPC 600 LSPVASLESE KKVPERSFEK LDELSPEREG LVDDFVQSDP MPMDSSESDA DIQDHLGKDF 660 SALADIYWPD SLGPLDLDIP SSTKYHTEDL IFSDSLSGLN RLIASSLDXF QNCSFFGFDK 720 KEAPSTVEAR ESATLSDFKI GSGI*

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MEAEAQISHD SNTQFQPEPV VSVQKGDPGV SSSVANAVIP QQPATKKPTR QWAAWTRQEE  60
ESFFTALRQV GKNFEKITSR VQSKNKDQVR HYYYRLVRRM NKLLGPGLCL DAKNSKDTNA  120
AMLRWWSLLE KYSCKASKLH LKPRRFKIFL EALEHQLLKD RKKNVRKRPL QGGNCLPPVP  180
TTVSNQGRAS GNEARAVKLV LVDSQNILKL GPSKSSMKRN INMGVSRSNT KGDSNTMKST  240
RQRKKSGMIS TAAYRKWEKA AIAGVSLVAD AAEHLERAAT VREIEQDQEN PGEKCSDPTD  300
YVLPSLPSCP QNQFVDNNVN SMKLKLQLFP IDEPTRRALE VRWSQESTLS AADIYAMIGS  360
PPIFRLRYGW FSNSELGLLN MQVPVASGSI LTQSKXSVYN SKDQIVNSVS FPTAAANAHS  420
MELSEGCRIS MNRNHTLMTS SPGVPNTRGN SXYLNTSSEE SRHPTANTLW HXKDVGDEAV  480
TTQLEDLEEL KLSSGTGLSA GEWADSLTNI SVGDLLSGVS QDLEDDCINP PIADNCHDVQ  540
QVPFSSDSFD AAIAAHISRH QDKMGQSTLV AHMSSIWDAE ETCDAFIFRR DHILHADRPC  600
LSPVASLESE KKVPERSFEK LDELSPEREG LVDDFVQSDP MPMDSSESDA DIQDHLGKDF  660
SALADIYWPD SLGPLDLDIP SSTKYHTEDL IFSDSLSGLN RLIASSLDXF QNCSFFGFDK  720
KEAPSTVEAR ESATLSDFKI GSGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g00200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017411181.1	0.0	PREDICTED: TSL-kinase interacting protein 1
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A0L9TP30	0.0	A0A0L9TP30_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R471	0.0	A0A0S3R471_PHAAN; Uncharacterized protein
STRING	XP_007156135.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9883	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	1e-180	TSL-kinase interacting protein 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]