PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 269aa MW: 29349.2 Da PI: 8.5817

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang1151s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.6	2.2e-31	57	111	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +YkeClkNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR++++e Vang1151s00010.1 57 GKYKECLKNHAVGIGGHALDGCGEFMAA-GAEGTLDALKCAACNCHRNFHRKDPSE 111 68***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-22	57	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.4E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-28	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.207	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.88E-19	178	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-31	178	247	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-26	188	244	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDFEEHDEAQ LGMPGPTYDH SSFNPCRVKM PTHIVQEDPL PPAATPPPTI SRNNARGKYK 60 ECLKNHAVGI GGHALDGCGE FMAAGAEGTL DALKCAACNC HRNFHRKDPS ESSFLMPFQH 120 RRHQPPPQFA AAYYRAPAGY LQVAGPHRGG LATLALPSTS GAGGGAQSPR EDQEDVSDPS 180 GGGSGSNKKR FRTKFTLEQK DKMLAFAEKL GWRIQKHDES VVQEFCSQTG VQRHVLKVWM 240 HNNKHTLVTI TATIPSWKLN VEAGKLRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-27	189	246	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang1151s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408794.1	0.0	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	5e-70	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0L9TCU2	0.0	A0A0L9TCU2_PHAAN; Uncharacterized protein
STRING	XP_007156483.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-59	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]