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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Vang1118s00020.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Whirly |
| Protein Properties |
Length: 273aa MW: 30501.3 Da PI: 9.1652 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang1118s00020.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 29.9 | 9.9e-10 | 75 | 121 | 1 | 47 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerky 47
svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a+++ + y
Vang1118s00020.1 75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVVQDSY 121
79***************************************998887 PP
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| 2 | Whirly | 61.9 | 1.3e-19 | 145 | 233 | 54 | 139 |
Whirly 54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk...gnesfsvPvskaefavlrsllv 139
+f+ls+ e+++l++l++ es ef ++a+ +sn +vrk+lk+ePl d +G+ ++lsv ++ + +e++++P+ +a+ avlrs+++
Vang1118s00020.1 145 VFSLSVSEMGTLISLGAMESWEFSRETAKAKSNGIEVRKVLKMEPLLDATGHSFSLSVYKKPANmeeIEENIYLPIRRAQLAVLRSIFN 233
7*********************************************************9875551116789****************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MSHIVYSLPL KHLSLPFHSF VPRKFIVPLN RNFSFIFPTS LSVRCNHSNI VEPFPPLPQY 60
PSVAELPQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVVQDS 120
YVFALQMYKC VVDISLSGCL GATLVFSLSV SEMGTLISLG AMESWEFSRE TAKAKSNGIE 180
VRKVLKMEPL LDATGHSFSL SVYKKPANME EIEENIYLPI RRAQLAVLRS IFNYIVPYLL 240
GWSAFASTIK AEVYSQMNSA NPRYSANNER NR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4koo_A | 2e-50 | 66 | 251 | 5 | 170 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_B | 2e-50 | 66 | 251 | 5 | 170 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_C | 2e-50 | 66 | 251 | 5 | 170 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_D | 2e-50 | 66 | 251 | 5 | 170 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 2e-99 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
