PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g06500.1
Common NameLR48_Vigan11g016700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 684aa    MW: 76421.4 Da    PI: 6.5496
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g06500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094324691954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Vang10g06500.1 432 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 469
                     554459******************************88 PP
2BELL118.43.4e-38294364272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     + elqk+k++Lls+leeVd+rYk+y++q+++v+ssFeavag g+a++Y +lAl+a+SrhFrcLkd i+eqi
  Vang10g06500.1 294 FVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQI 364
                     679*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-58230362IPR006563POX domain
PfamPF075262.1E-46236360IPR006563POX domain
PROSITE profilePS5007112.082410473IPR001356Homeobox domain
CDDcd000861.88E-11413474No hitNo description
SMARTSM003895.8E-9413477IPR001356Homeobox domain
SuperFamilySSF466896.42E-17414479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27416479IPR009057Homeodomain-like
PfamPF059209.3E-18430469IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MMARQLCEDK SKDMASSTGL FYPDVSSNIP TLQPHLMNHI QGFVTDPEMF NLTTGMEMIG  60
FSKNLHPHSE SNGVMWKSFF GKPSQHAGPS SSKTMNESSC NFYNQHEYSN KQDFTSGISE  120
TSSENLIVGG AHDSAPWQEN RLMLDDSSLR CVFPCEGNER PSQGLSLSLS STNPSSIGLQ  180
SFELRQTNHH QHLSDFVSRD GYFGKSVNAQ QQQQVLQDGY MSPNKAANIY QGHFLIKNSK  240
FLVPAQLLLN EFCSLGTKEN DVQKQKQSLK NKPWEEGNNG GGSSKNHSLG SLEFVELQKR  300
KTRLLSMLEE VDRRYKHYCN QMKAVVSSFE AVAGNGAATV YSALALRAMS RHFRCLKDGI  360
MEQIQTTRKA MGEKDPVAPG TTRGETPRLK IIDQSLRQQR AFQQISMMET HPWRPQRGLP  420
ERSVSVLRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL  480
EEEKEQQNDV ASSEGGGTNP EGDQNAARQD QKPTQARLLR IDSEMSSMVS NTEQKNDSKS  540
GKSVQNDEQM NESNHPAEAF GAVELDFSSY AQQSSGVVGY DGDSGNERFQ GGGGGVSLTL  600
GLQQQGESGV SLAFPPATQS SMFYPRDHIE ECQTVEYSLL DGEGQNMPYR NLMGTQLLHD  660
LFAVNNFRRC MMCCVDGVPM AKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15419477563Homeobox protein Meis2
4xrm_B2e-15419477563Homeobox protein Meis2
4xrs_A1e-15419476158Homeobox protein Meis1
4xrs_B1e-15419476158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442477.10.0PREDICTED: homeobox protein BEL1 homolog isoform X1
SwissprotQ388971e-138BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0L9VPZ50.0A0A0L9VPZ5_PHAAN; Uncharacterized protein
STRINGXP_007160096.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-115TALE family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]