PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g06430.1

Common Name

LR48_Vigan11g017800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 305aa MW: 34368.5 Da PI: 5.8053

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g06430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	137	196	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ldD ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+ +tY+ eH h+ Vang10g06430.1 137 LDDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSHLDPAVFLVTYTAEHSHP 196 58************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.6E-31	123	198	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	131	198	IPR003657	WRKY domain
PROSITE profile	PS50811	32.374	132	198	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	137	197	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	138	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDEFECMRDW DLEAIVRGSS GEATAMDDPN PDFSYFFSDQ DELLDSFPEF SETTRVLDDL 60 EDLYKPFYPV LHPLSPHTIV TTSLSIPIEP QQVKELKASE EKVALQGLKA PPTPKCKKGK 120 KNQNKSVVKQ VTTAEGLDDA WAWRKYGQKP IKGSPYPRSY YRCSSSKGCL ARKQVERSHL 180 DPAVFLVTYT AEHSHPHPTR RNSLAGTTRK NNSLIPPPTT TRNHNTTCSS RTPLMVQSIE 240 DKLVTSVQQS MDLKKEEQHF VEWFDDGAQF GDAWIPTSDL EKFIGFECQH FALDGGFTDG 300 YAHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-19	124	199	1	80	Disease resistance protein RRS1
5w3x_D	4e-19	124	199	1	80	Disease resistance protein RRS1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00448	DAP	Transfer from AT4G23550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g06430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027918161.1	0.0	probable WRKY transcription factor 29
TrEMBL	A0A0L9VPZ7	0.0	A0A0L9VPZ7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QXI2	0.0	A0A0S3QXI2_PHAAN; Uncharacterized protein
STRING	XP_007160109.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6217	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	9e-36	WRKY family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]