PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g05060.1

Common Name

LR48_Vigan01g003800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 293aa MW: 32797.4 Da PI: 10.1229

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g05060.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.9	2e-21	44	136	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Lie ++ +e+ + g+ + p+We vs+++++rg++r+++qC+++w nl ++++kik++e++ ++es+s + + +++ Vang10g05060.1 44 RWTRQETLVLIESKKMVESGEQ-GCrfrsasgfiQSDPKWEMVSSFCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESGVKEESESFWIMRNDV 136 8**********995555444.22233445888*******************************************999998888777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-4	41	111	IPR009057	Homeodomain-like
Pfam	PF13837	6.3E-12	43	132	No hit	No description
PROSITE profile	PS50090	6.597	44	109	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAEESAEKIC EGVSESPTTT PVGGQTPLEG DSKTRRIKAT RHPRWTRQET LVLIESKKMV 60 ESGEQGCRFR SASGFIQSDP KWEMVSSFCQ QRGVKRGAVQ CRKRWGNLLT DFRKIKKWES 120 GVKEESESFW IMRNDVRKEK KLPGFFDSVV YNVLDGGVCT TVAFPLTLTS VAANMANGVL 180 KVPPGFKEKE ITGSLRNTPL LSLPTPGFQR EPVFQHGYKR KRVSSDSSED NTDFDNSITK 240 LLRRNSEILK AHLGTQNINY ELARNQQKQQ TDILVAALGK LTDALTKIAD KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g05060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413923.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A0L9TK27	0.0	A0A0L9TK27_PHAAN; Uncharacterized protein
STRING	XP_007159959.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-65	Trihelix family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]