PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g04530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 21709.6 Da PI: 7.3712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 8e-08 | 142 | 187 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ Ed l++a k ++++ +W+++a+ ++ gR+ c r+ + Vang10g04530.1 142 WSSGEDIALLNALKVFPKDvsmRWEKVAAAVP-GRSKAACMRRFTEL 187 ********************************.*********99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.193 | 43 | 78 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.2 | 47 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 136 | 188 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-5 | 138 | 190 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-11 | 138 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-7 | 141 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-6 | 142 | 188 | No hit | No description |
PROSITE profile | PS50090 | 7.259 | 142 | 188 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEFLDEDARP RQRRPEEVAA IGPVVSVSTA EKRGGGGGVE KVSTLVEEKD WNEEDVEVLK 60 KQLVKNPVGK PGRWEAIAAA FGGSHGVESV IKTAKELGEK KVDDSDSYAL FLKNRKALDK 120 RVVEENGGED SVTVDKVVEN GWSSGEDIAL LNALKVFPKD VSMRWEKVAA AVPGRSKAAC 180 MRRFTELKKG FRNAKAAAE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g04530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409035.1 | 1e-125 | PREDICTED: dnaJ homolog subfamily C member 2 | ||||
Swissprot | Q9ASQ2 | 9e-64 | MAMYB_ARATH; Transcription factor MAMYB | ||||
TrEMBL | A0A0L9TJL1 | 1e-124 | A0A0L9TJL1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QY80 | 1e-124 | A0A0S3QY80_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159816.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10686 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 3e-66 | MYB_related family protein |