PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g02670.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 897aa MW: 98152.8 Da PI: 5.3409

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g02670.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5.1e-08	67	94	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++++ C++Gd+C++aHg+ Vang10g02670.1 67 WKTSLCSYYRSHNnSCNHGDTCRYAHGE 94 8****777766***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	8.7E-13	63	100	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.91E-7	64	99	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.5E-4	66	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	66	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-6	67	94	IPR000571	Zinc finger, CCCH-type
CDD	cd00590	1.07E-6	151	223	No hit	No description
SuperFamily	SSF54928	2.58E-7	154	236	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	5.5E-7	155	237	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS51687	43.471	280	896	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	2.33E-47	283	308	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.33E-47	340	474	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.33E-47	509	634	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	3.3E-64	534	634	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF13847	3.0E-9	578	635	IPR025714	Methyltransferase domain
CDD	cd02440	2.02E-6	580	634	No hit	No description
Pfam	PF05958	8.3E-8	780	831	IPR010280	(Uracil-5)-methyltransferase family
Gene3D	G3DSA:3.40.50.150	3.3E-64	780	835	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.33E-47	783	836	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
PROSITE pattern	PS01230	0	791	823	IPR030390	RNA methyltransferase TrmA, active site
Gene3D	G3DSA:3.40.50.150	3.3E-64	871	896	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.33E-47	880	896	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MAEPVANTQL SPSKTLDSTN GHDSTLEPNQ MLPHDAQLNH ENDGVVSTRK RSREDDDGEE 60 RSLHPMWKTS LCSYYRSHNN SCNHGDTCRY AHGEEELRPR PDNTWDPTSE RAKKALKTET 120 GEKCSVSEDV MMTEAVVDGD DYDSNHALSK CLVHLPRKWS SEDLRNFLSE QASLFGYLGI 180 AFKHAKKKKG MMIGFVTFED EEQLKSSSKD LEGKTIGNKT VKVADVIPRS FQKKSNSSVA 240 SNQELDEGDD PSSGALDAET NNDKLSVDGS VSKTRNLRDV VTPLAHITYD DQLEQKKASL 300 MQILKKLTRN ARKACPNGVS LPEWILKSRE IGGLPCKLEG IIASPIVNGY RNKCEFSVGY 360 SLEGNVTVGF MLGNFREGVT AVEEATECPN VSTIACKYAT MFQEFLQHSD LPVWNRFKNT 420 GFWRQLTVRE GRTNGNTDHA ETFGGIAEVM LIVQVSTANF DDALVASEFK RLAHAFVAGA 480 TSHCPTLPLT ALFVQDHQGI SNVAPADAPL HLLPLPKAGG DPEINENNNA MDVRIHDYIN 540 NLRFSISPTA FFQVNTLAAE KLYSLAGDWA CLGPDTLLFD VCCGTGTIGL TLAHRVGMVI 600 GIEMNASAVS DAHRNAEING IKNIRFICSK AEDVMGSLLR EYLNMTKKQD DSNTPKNGNE 660 IPEDSACPEA EKGEMTCDCA ENNNAEVGSE VQNGGTSEQV DGISEQTENV TGSQLRDDGN 720 VPKEQSDDPN VCGGGNDIPG DSTCSRPETS DMTPRSENNN AEVGSEIRKG NSSENGNTSM 780 QQFKNVVAIV DPPRAGLHPT VIKALRTHPR LRRLVYISCN PESLVANAIE LCTPSPAKIE 840 KGNKDNRGWR NMSSAGLARH RAKSMPISEA FHPVKAMAVD LFPHTPHCEL VMLLER*

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MAEPVANTQL SPSKTLDSTN GHDSTLEPNQ MLPHDAQLNH ENDGVVSTRK RSREDDDGEE  60
RSLHPMWKTS LCSYYRSHNN SCNHGDTCRY AHGEEELRPR PDNTWDPTSE RAKKALKTET  120
GEKCSVSEDV MMTEAVVDGD DYDSNHALSK CLVHLPRKWS SEDLRNFLSE QASLFGYLGI  180
AFKHAKKKKG MMIGFVTFED EEQLKSSSKD LEGKTIGNKT VKVADVIPRS FQKKSNSSVA  240
SNQELDEGDD PSSGALDAET NNDKLSVDGS VSKTRNLRDV VTPLAHITYD DQLEQKKASL  300
MQILKKLTRN ARKACPNGVS LPEWILKSRE IGGLPCKLEG IIASPIVNGY RNKCEFSVGY  360
SLEGNVTVGF MLGNFREGVT AVEEATECPN VSTIACKYAT MFQEFLQHSD LPVWNRFKNT  420
GFWRQLTVRE GRTNGNTDHA ETFGGIAEVM LIVQVSTANF DDALVASEFK RLAHAFVAGA  480
TSHCPTLPLT ALFVQDHQGI SNVAPADAPL HLLPLPKAGG DPEINENNNA MDVRIHDYIN  540
NLRFSISPTA FFQVNTLAAE KLYSLAGDWA CLGPDTLLFD VCCGTGTIGL TLAHRVGMVI  600
GIEMNASAVS DAHRNAEING IKNIRFICSK AEDVMGSLLR EYLNMTKKQD DSNTPKNGNE  660
IPEDSACPEA EKGEMTCDCA ENNNAEVGSE VQNGGTSEQV DGISEQTENV TGSQLRDDGN  720
VPKEQSDDPN VCGGGNDIPG DSTCSRPETS DMTPRSENNN AEVGSEIRKG NSSENGNTSM  780
QQFKNVVAIV DPPRAGLHPT VIKALRTHPR LRRLVYISCN PESLVANAIE LCTPSPAKIE  840
KGNKDNRGWR NMSSAGLARH RAKSMPISEA FHPVKAMAVD LFPHTPHCEL VMLLER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5xj1_A	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5xj2_A	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5xj2_B	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5xj2_C	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5xj2_D	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5zq0_A	7e-17	536	641	263	372	Uncharacterized RNA methyltransferase SP_1029
5zq1_A	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5zq8_A	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5zq8_B	7e-17	536	641	262	371	Uncharacterized RNA methyltransferase SP_1029
5zth_A	7e-17	536	641	263	372	Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g02670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433588.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1
Refseq	XP_017433589.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X2
Swissprot	Q8L7S3	0.0	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A0S3SCV3	0.0	A0A0S3SCV3_PHAAN; Uncharacterized protein
STRING	XP_007132247.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8854	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]