PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g02310.1 | ||||||||
Common Name | LR48_Vigan11g086800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20197.3 Da PI: 9.4759 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.5 | 5.4e-21 | 12 | 56 | 4 | 48 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++ rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs ++ y Vang10g02310.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYS 56 56678********************************98776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.94E-26 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.002 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGRRKIEIAA VKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAIVVFSI GNRPYSFGHP 60 GVDAVAAKFL EHEIVKSNDV EQNNVEVGDI GRLNQQLLDI EARILVEEKK GLELDQILKQ 120 HQLSQPSQFK QLQDSYLEFQ RRLKDYTDAI EVSECLILLA QEPVVQITKQ VKKRRKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 175 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g02310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441127.1 | 1e-127 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0L9VRY9 | 1e-125 | A0A0L9VRY9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160291.1 | 2e-98 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-34 | AGAMOUS-like 29 |
Publications ? help Back to Top | |||
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