PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g01550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 334aa MW: 36936 Da PI: 4.8453 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll +++ +G g+W++ a++ g++Rt+k+c++rw++yl Vang10g01550.1 19 RGPWTLEEDNLLSQYISDHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-22 | 12 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.968 | 14 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-16 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-21 | 20 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.05E-13 | 21 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 70 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 67 | 71 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MSTSKSVSSS SEDDNELRRG PWTLEEDNLL SQYISDHGEG RWNLLAKRSG LKRTGKSCRL 60 RWLNYLKPDV KRGNLTPQEQ LLILELHSKW GNRLLQKVKE SSSSSAMSIQ NQAIPLVLDD 120 GVSQQSTIGT IPWQGACVSM NGGSPTYMDQ HEQNSDSEHN SGSCISFSES ANMPKVSHHF 180 GHTMDQFHSL SNNDFGTYSY DPYHVNDNAY EMETFKAATA KVAQDVQYPI ADCQTAGTDW 240 LSNDFAYRSE LEWQNVHGFL IFYDGPICIG LLKPNIEESS HVNLTKLADY DLCSFANLNE 300 LVGCGLGSYA DLIELVVPLP GIVGPSSQEL GRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-15 | 16 | 112 | 1 | 96 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g01550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410995.1 | 1e-163 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A0L9THX6 | 1e-162 | A0A0L9THX6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QWQ8 | 1e-162 | A0A0S3QWQ8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160381.1 | 1e-141 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 5e-44 | myb domain protein 116 |