PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g00240.1
Common NameLR48_Vigan05g097200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-X1
Protein Properties Length: 827aa    MW: 88757 Da    PI: 7.8795
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X125.33.3e-08159176118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H+C+++CH+GpC+pC
  Vang10g00240.1 159 CGRHRCEQICHLGPCDPC 176
                     ****************** PP
2zf-NF-X116.41.9e-05223240118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C+++CH+G C++C
  Vang10g00240.1 223 CGNHICIETCHPGSCGEC 240
                     ****************** PP
3zf-NF-X117.11.2e-05281298118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH G+C pC
  Vang10g00240.1 281 CGIHHCEEACHAGDCSPC 298
                     ****************** PP
4zf-NF-X118.54.3e-06377395119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H C++lCH G CppC 
  Vang10g00240.1 377 CGQHACESLCHSGHCPPCL 395
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.023104122IPR000967Zinc finger, NF-X1-type
PfamPF014226106121IPR000967Zinc finger, NF-X1-type
CDDcd060086.71E-11149197No hitNo description
PfamPF014224.7E-6159176IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4159178IPR000967Zinc finger, NF-X1-type
CDDcd060088.95E-8213256No hitNo description
PfamPF014220.0027223240IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032223242IPR000967Zinc finger, NF-X1-type
CDDcd060083.20E-12271319No hitNo description
PfamPF014222.1E-4281298IPR000967Zinc finger, NF-X1-type
SMARTSM004387.6E-4281300IPR000967Zinc finger, NF-X1-type
PfamPF0142213339350IPR000967Zinc finger, NF-X1-type
SMARTSM0043870339369IPR000967Zinc finger, NF-X1-type
CDDcd060085.89E-8367410No hitNo description
PfamPF014228.1E-5377394IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4377396IPR000967Zinc finger, NF-X1-type
SMARTSM004380.37434452IPR000967Zinc finger, NF-X1-type
PfamPF0142212441451IPR000967Zinc finger, NF-X1-type
PfamPF014220.52487502IPR000967Zinc finger, NF-X1-type
SMARTSM004387.5487516IPR000967Zinc finger, NF-X1-type
PfamPF0142221518544IPR000967Zinc finger, NF-X1-type
SMARTSM004380.098525546IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.9E-5620671IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MVRRSAPIWS CSSCFSIFHL NCIKKWARAP TSVDVSVDKN QRFNWRCPGC QSVQLTSSKE  60
IRYVCFCGKR PDPPSDLYLL PHSCGEPCAK PLERELGGDK EVLCPHVCVL QCHPGPCPPC  120
KAFAPPRLCP CGKKNVTTRC SDRQSVLTCG QRCEKLLECG RHRCEQICHL GPCDPCEIPV  180
NASCFCSKRT ELILCGEMAL KGEIKTEGGV FSCGSTCGKK LGCGNHICIE TCHPGSCGEC  240
GLLPSHIKTC CCGKTRLKQE RQSCLDPIPT CSQVCGKTLP CGIHHCEEAC HAGDCSPCLV  300
LVSQKCRCGS TSRTVECCKT KVDAVKFTCE KPCGQKRNCG RHRCSERCCP LSNPNNVQIA  360
DWDPHFCSLP CGKKLRCGQH ACESLCHSGH CPPCLETIFT DLTCACGKTS IPPPLPCGTP  420
PPSCQLPCSV PQPCSHPASH SCHFGDCPPC SVPVAKECIG GHVILRNIPC GSKDIRCNKL  480
CGKTRQCGLH ACGRTCHLPP CDNPSTVPGT RASCGQTCGA PRRDCRHTCT APCHPSTPCP  540
DTRCEFPDKR DAVRVIAERW KLAVYVAGRE PKRFVVVHVT PKSRAPARVL GVKGTTTVNA  600
PLPPAFDPLV DMDPRLVVSF LDLPREADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA  660
ATAMRRLDHG TVYQGAVVVI VPNVGASAAS SATNAWGGSG TMKGGGSLAA LKGGNPWKKD  720
VQETGWKDSW GDEEWATGSA NVHLPIQKKD SLISTSVNPW SVLNQESSSS SSAAAVKADV  780
SKEHSDSSAV TNLEPHDGGS NLGQHAGNLD TLEDSEVVDD WEKACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g00240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425200.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0L9UKT00.0A0A0L9UKT0_PHAAN; Uncharacterized protein
STRINGXP_007160557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]