PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 511aa MW: 57813.6 Da PI: 5.0615

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang1063s00030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++v+++G+g+W+ + + g+ R++k+c++rw ++l Vang1063s00030.1 22 KGPWTAAEDAILAEYVRKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHL 69 79****************************99*********996 PP
2	Myb_DNA-binding	47	5.7e-15	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+++ +++++++G++ W++ a++++ gRt++++k++w++ Vang1063s00030.1 75 RGVFSKEEQKKVIQLHAMMGNK-WAKMAQELP-GRTDNEIKNFWNT 118 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-21	14	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.515	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-28	19	116	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-15	22	69	IPR001005	SANT/Myb domain
CDD	cd00167	7.73E-11	24	69	No hit	No description
PROSITE profile	PS51294	23.35	70	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-23	72	123	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-14	75	118	IPR001005	SANT/Myb domain
CDD	cd00167	3.26E-11	78	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MSSFSNEDQS NDNQSQENNL RKGPWTAAED AILAEYVRKH GPGNWNIVQQ NTGLLRCGKS 60 CRLRWTNHLR PDLRRGVFSK EEQKKVIQLH AMMGNKWAKM AQELPGRTDN EIKNFWNTRL 120 KKRKRVSLEL YPDGIKPVPD AHNPNTTLAT YSHPDEVVGT SSQHAMLNNF RNTQNQPFPV 180 QPVSMVRENM KPPQEMQPSE IPRQLQLPEA GRSSYVPHMV FNNSSNTPNQ LLHVQPNSMV 240 SGNMKPSGIP QGMQLSEVPE ELQRQGTSSS YVPHVVFNNY SNAPNEPLCV QAISMVRENM 300 EPSGIPQGMQ LSEVPEELQR QGTSSSYVPH VVFNNYSNAP NEPLCVQAIS MVRENMEPSG 360 IPQEMQLSEV PEELQLPEAD FDALLGDFAY DDYACLDGLS STSELPPLPS CHDLTFEEPM 420 IVRGNSQAET NQYYVPRSPR SNGYLESIFY PPKVSQEQDD FSMQGELNMR NATEISYQRK 480 PENEHVLGDL IWPENQHDDA LYGYRSFLKP *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MSSFSNEDQS NDNQSQENNL RKGPWTAAED AILAEYVRKH GPGNWNIVQQ NTGLLRCGKS  60
CRLRWTNHLR PDLRRGVFSK EEQKKVIQLH AMMGNKWAKM AQELPGRTDN EIKNFWNTRL  120
KKRKRVSLEL YPDGIKPVPD AHNPNTTLAT YSHPDEVVGT SSQHAMLNNF RNTQNQPFPV  180
QPVSMVRENM KPPQEMQPSE IPRQLQLPEA GRSSYVPHMV FNNSSNTPNQ LLHVQPNSMV  240
SGNMKPSGIP QGMQLSEVPE ELQRQGTSSS YVPHVVFNNY SNAPNEPLCV QAISMVRENM  300
EPSGIPQGMQ LSEVPEELQR QGTSSSYVPH VVFNNYSNAP NEPLCVQAIS MVRENMEPSG  360
IPQEMQLSEV PEELQLPEAD FDALLGDFAY DDYACLDGLS STSELPPLPS CHDLTFEEPM  420
IVRGNSQAET NQYYVPRSPR SNGYLESIFY PPKVSQEQDD FSMQGELNMR NATEISYQRK  480
PENEHVLGDL IWPENQHDDA LYGYRSFLKP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-27	19	123	4	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang1063s00030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017428503.1	0.0	PREDICTED: myb-like protein Q
TrEMBL	A0A0L9UVB9	0.0	A0A0L9UVB9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RJX0	0.0	A0A0S3RJX0_PHAAN; Uncharacterized protein
STRING	XP_007141541.1	3e-85	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40799	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	6e-58	myb domain protein 101

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]