PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 469aa MW: 51448.4 Da PI: 8.0719

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang1037s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	81.5	9e-26	142	208	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE.......EEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk.......versaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + Cpv+k+ v+r+a+d +++++tYeg Hnh+ Vang1037s00010.1 142 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpLCPVRKQvrlslwlVQRCAQDMSILITTYEGIHNHP 208 58************************998**9444444459*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-28	128	210	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-23	135	210	IPR003657	WRKY domain
PROSITE profile	PS50811	24.179	137	210	IPR003657	WRKY domain
SMART	SM00774	3.2E-31	142	209	IPR003657	WRKY domain
Pfam	PF03106	6.5E-24	143	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MLKLLDILQQ EKTEDWANAK GVTSREESEE SELVSLSLGI SLKGKTKGER KHCKREDEGM 60 DKGLRLGLDI NLDPVDHAEA ANISSTASSF GEGGKEEEPS EMWPPSKVLK AMKYVDKSEA 120 SQNDQPKKTR VSIRARCDTQ TMNDGCQWRK YGQKMAKGNP CPRAYYRCTV SPLCPVRKQV 180 RLSLWLVQRC AQDMSILITT YEGIHNHPLP ISATAMACTT SAAASMLQSP SLSSQNGHGL 240 VNSAISSITN FSAPNYNLDN ALNFSTYHVS RPHQFYFPNS SISSLNSHPT ITLDLTAPPT 300 SSNLNFSSGF SPLQSSMSPS PWSSYSSYFN SGPLTHKRNH GDYLLNTGHQ NQPYLEHLHH 360 PICTSNNNFS QRSLPDSIIA ATKAITSNPK FQSVLATALT TYVGNEAGGX RLRENHVLEN 420 AELNLKLCSE NTIGCASSRY LNVSSSALNP QQGNSSIFPL PSLPEQWK*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MLKLLDILQQ EKTEDWANAK GVTSREESEE SELVSLSLGI SLKGKTKGER KHCKREDEGM  60
DKGLRLGLDI NLDPVDHAEA ANISSTASSF GEGGKEEEPS EMWPPSKVLK AMKYVDKSEA  120
SQNDQPKKTR VSIRARCDTQ TMNDGCQWRK YGQKMAKGNP CPRAYYRCTV SPLCPVRKQV  180
RLSLWLVQRC AQDMSILITT YEGIHNHPLP ISATAMACTT SAAASMLQSP SLSSQNGHGL  240
VNSAISSITN FSAPNYNLDN ALNFSTYHVS RPHQFYFPNS SISSLNSHPT ITLDLTAPPT  300
SSNLNFSSGF SPLQSSMSPS PWSSYSSYFN SGPLTHKRNH GDYLLNTGHQ NQPYLEHLHH  360
PICTSNNNFS QRSLPDSIIA ATKAITSNPK FQSVLATALT TYVGNEAGGX RLRENHVLEN  420
AELNLKLCSE NTIGCASSRY LNVSSSALNP QQGNSSIFPL PSLPEQWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-18	129	210	1	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang1037s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017438420.1	0.0	PREDICTED: probable WRKY transcription factor 72
TrEMBL	A0A0L9VNC2	0.0	A0A0L9VNC2_PHAAN; Uncharacterized protein
STRING	XP_007157685.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-45	WRKY DNA-binding protein 72

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]