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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang09g08860.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
B3 |
Protein Properties |
Length: 300aa MW: 33068.8 Da PI: 8.4569 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang09g08860.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 96.5 | 1.8e-30 | 38 | 138 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
B3 5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93
tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l+
Vang09g08860.1 38 VTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDmYRHRLY 132
689***********************66677899*************************************************766888899999 PP
EEEE-S CS
B3 94 vkvfrk 99
+ ++r+
Vang09g08860.1 133 IDWRRR 138
999987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDLIRQVKGT YSDSREEEEE EEVTEIIGIT REAESSMVTP SDVGKLNRLV IPKQHAEKYF 60 PLDSSSNEKG LLLNFEDRNG KVWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ 120 RGLGDMYRHR LYIDWRRRTD HGHPPSDPSA SPLFLPSIRW SSMPMGGGAD QNLAGRGNSI 180 VPMIIDSVPV NVGHRNHRHG HGGMSSGGGS STTSSGKRLR LFGVNMECAS SGEDSKGLSL 240 GSAAHVTVGN SLPSSSSLQQ RLRMPHEDPL SSSARFGDHK GGSGTSLLFD LDPSLQYHQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 8e-58 | 37 | 142 | 11 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-58 | 37 | 142 | 11 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |