PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g05450.1 | ||||||||
Common Name | LR48_Vigan04g025300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 390aa MW: 44435.6 Da PI: 6.5017 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.5 | 8.6e-09 | 19 | 62 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+i n + r + kR++ +lK +E + C++++++i++ +g Vang09g05450.1 19 KPITNGRDRDLALMKRKKALLKTISEFCSVCGVKACLIMYDGKG 62 6899***********************************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.22E-13 | 11 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-4 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.615 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-8 | 21 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MNLYMCVFQN MGRPKLILKP ITNGRDRDLA LMKRKKALLK TISEFCSVCG VKACLIMYDG 60 KGDSPPLTWP QDPIEMHSII QRYERMVYEK IPKNFDLNNF FETRKNMVDS EIAKVQKEIL 120 ETKYPTWHPC FNNLGAEELK NFIARLDSKL EACNKRTVTV KCKKQDEAQF NFKQCLIQPE 180 CVAPNPTQLV FMKDILQNQL PFAPMNPLNG NLAPPFQHNS EKGSSSQSPK LNFDPNLMQL 240 KEENKGVVDT SNACQTDVLK NPSNKFDVPY DFLDESLNLF DQLGEIQSLN QHWGNNQQDA 300 LAVGGSITTM NGGVTDDTNF HGNQYNTETS LCNYNGVMQS YNYDASWQDI GFQQQNLQQM 360 VTLPSFQPSV DKFKHITTTE SLKFCYPNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g05450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421382.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A0L9UAW5 | 0.0 | A0A0L9UAW5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138494.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-11 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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