PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g04960.1
Common NameLR48_Vigan04g022800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 364aa    MW: 40972.6 Da    PI: 5.4314
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g04960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073013332254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  Vang09g04960.1 301 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 333
                     59*****************************87 PP
2ELK29.12.3e-10254275122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Vang09g04960.1 254 ELKHELKQGYKEKIVDIREEIL 275
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1890134IPR005540KNOX1
PfamPF037902.4E-1792133IPR005540KNOX1
SMARTSM012561.2E-25142197IPR005541KNOX2
PfamPF037915.7E-19146196IPR005541KNOX2
PfamPF037898.2E-7254275IPR005539ELK domain
SMARTSM011886.1E-4254275IPR005539ELK domain
PROSITE profilePS512139.969254274IPR005539ELK domain
PROSITE profilePS5007111.612274337IPR001356Homeobox domain
SMARTSM003891.2E-10276341IPR001356Homeobox domain
SuperFamilySSF466895.56E-16276340IPR009057Homeodomain-like
CDDcd000862.99E-11277338No hitNo description
Gene3DG3DSA:1.10.10.606.0E-25281338IPR009057Homeodomain-like
PfamPF059209.6E-18294333IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAFHDHMAHE ITFQPFTEDQ QMGQGRDMQR LLPLSAGAPT WLNGNNAATL RQQNFLHLQP  60
ESATAQPNDD VRGGIDRNRT ESNSEPDDLA EYKADILGHP LYDQLLSAHV SCLRIATPVD  120
QLPRIDAQLQ QSQRVVDKYS GLGNGVVDDK ELDQFMTHYV ILLCAFKEQL QQHVRVHAME  180
AVMACWELEQ SLQTLTGVSP GEGTGATMSD DEEDQAESNA NLYEGSMDGA DSLSFGPLVP  240
TETERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSL LKAWWQSHSK  300
WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHTNPS SSSGSKSKRK SSGAGETSNQ  360
SFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g04960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422504.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0L9UAU40.0A0A0L9UAU4_PHAAN; Uncharacterized protein
STRINGXP_007138444.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-160KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]