PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g04480.1
Common NameLR48_Vigan04g024900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 458aa    MW: 48381.4 Da    PI: 6.732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g04480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12237282555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Vang09g04480.1 237 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 282
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-13230286No hitNo description
SuperFamilySSF474595.5E-17230292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16234291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9237282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
TTTTTTTTAT NQIQNSHINH HHHQPLQHHH QLPHFDPTSQ DDFLDQMFSS CSWPDLNPNK  60
SLWDPNTLSD QTTPSDNDNT NNTNHNNVAF PYDEPSTLAS KFRNHQISAS STKNAAAALM  120
LQHQLLMSRD SPLLHMPLSL PQNDVVDASS FKSPNPGGET SVQALYNGFA GSLHGAGQAS  180
NQTQHFQHPQ GSSNPMQGQN FGAPVTGGAT NQAPASGAAA QPRQRVRARR GQATDPHSIA  240
ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA  300
PLVADMSSEG GGDCIQANGN ANRGGSLAPN SNSNNNQTTA STSNDSLTMT EHQVAKLMEE  360
DMGSAMQYLQ GKGLCLMPIS LATAISTATC HTRNPLINAA SGSTQIPTNA APGTLVNPAV  420
ASNGEGPSSP SMSVLTVQSA VVGNEGAVKD AASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g04480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422479.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG92e-93BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0L9UBJ50.0A0A0L9UBJ5_PHAAN; Uncharacterized protein
STRINGXP_007138416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]