PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g03790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 28317.2 Da PI: 6.8911 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 38 | 5.8e-12 | 113 | 141 | 3 | 31 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaar 31 gk+drhski+T++g+RdRR+Rls+++a+r Vang09g03790.1 113 GKRDRHSKISTAGGLRDRRMRLSLDVARR 141 89*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-11 | 113 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 8.76 | 114 | 202 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.434 | 138 | 155 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MQSQTSDTFP SHCENETISC YDPAFYYTRP FSIDSESNPT WKQENNTDLP PLSFFHFPSP 60 PFEDSHISLQ QHHDFLLQFH HNPPPQNPDP QPVSLSVETS AKKNIQTPRK RLGKRDRHSK 120 ISTAGGLRDR RMRLSLDVAR RERARERARE RTREKMRSRG LAEESKPCRE EENQNLIQLG 180 SWKPSETGEE FVTKSHGLHP SLDVITEGKE HSYHAKEHDD DDSLVILSKW SPSLIFNNYG 240 FSHE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 154 | RARERARERTREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g03790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420178.1 | 3e-88 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A0S3RH29 | 9e-87 | A0A0S3RH29_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138340.1 | 9e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40795 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-07 | TCP domain protein 12 |