PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 238aa MW: 27702.2 Da PI: 7.9773

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g02510.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.4	9.4e-26	156	204	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi +AAkeL+v+lT LK++CR++GI+RWPhRk+ sl Vang09g02510.1 156 ILSRKTVSQYFYMPISQAAKELNVGLTHLKKRCRELGIQRWPHRKLMSL 204 57899*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	140	226	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-21	157	204	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MENQQLTFWN SNYQIDENSF APTCQFSYDY FRKSYHVSIF NFCRGNASDG FHWPYEFPLQ 60 DSYFDVVPFM KCYYPHDILY ETLPLEPTPL SFQGFAGADY DFSDVKNVLS AWNEVDVSDH 120 KPAFSSSNDG GSVNETMEEV KGKQHREERI SSSARILSRK TVSQYFYMPI SQAAKELNVG 180 LTHLKKRCRE LGIQRWPHRK LMSLQTLIKN MQIWNLKIKQ EGLDKLVSRL TTRRGNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g02510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014495091.1	1e-133	protein RKD1
Swissprot	Q9CA66	8e-27	RKD2_ARATH; Protein RKD2
TrEMBL	A0A1S3TMU6	1e-132	A0A1S3TMU6_VIGRR; protein RKD1
STRING	GLYMA06G20881.1	4e-95	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-29	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]