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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g02470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 401aa MW: 44327.4 Da PI: 8.6018 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 121 | 181 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Vang09g02470.1 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 181 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-30 | 115 | 178 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 123 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.686 | 125 | 179 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 127 | 163 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MKTLTWRRVG CTERECNSEN QTLEKKIYSK PQKLVAMNQN PSDPAEEVSE KTKEADLPLN 60 AADSNNTAEG LQNPNTPSID EESAKSKSNK SENDQTDPTT TVAATETNNS PDNNNKTLKK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS 180 ASHYRHITIS EALQAARIDS PNATHLLKPN GRVLSFGIDP PICDSMASVL NLAEKKTRNG 240 FHSMEDQRNK DDDCSTPAMC PPGFPMSFYP HAFWNIPWFP THHAAPAPRS PGSGPNSPTL 300 GKHSRDDDLA KQEHVHEEPS RQRNGSVLVP KTLRIDDPSE AAKSSIWATL GIKNECVSGG 360 GMFKGFQSKK EEKDRVIETS PVLRANPAAL SRSLNFHGNS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g02470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422391.1 | 0.0 | PREDICTED: cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 1e-101 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A0S3RG65 | 0.0 | A0A0S3RG65_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138175.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-99 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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