PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g01270.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||
Protein Properties | Length: 378aa MW: 42830 Da PI: 8.4067 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 57 | 3.3e-18 | 23 | 78 | 11 | 71 |
E2F_TDP 11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +fl+l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg Vang09g01270.2 23 CSFLRLYNRDGVRLIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYTWKG 78 579*****9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 76.1 | 3.4e-24 | 148 | 227 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g Vang09g01270.2 148 RREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNantsIMRTKVRRLYDIANVLSSMNLIEKthttnTRKPAFRWLG 227 689*******************************999999999*************************999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 3.9E-16 | 18 | 78 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.67E-12 | 22 | 76 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.7E-19 | 22 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.1E-15 | 23 | 78 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-23 | 144 | 227 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.3E-29 | 148 | 227 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.01E-12 | 150 | 228 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.3E-19 | 150 | 227 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
LLLSIASIQF NFILYFSRAS SSCSFLRLYN RDGVRLIGLD DAASRLGVER RRIYDIVNVL 60 ESVGVLARKA KNQYTWKGFS AIPEALQELK EDGLKENPGS FDDSNDSAKV SDDEDEEETS 120 PIVNTESQND KEIPDSTALG LSSKNENRRE KSLALLTQNF VKLFICSSIE MISLDEAAKL 180 LLGNANTSIM RTKVRRLYDI ANVLSSMNLI EKTHTTNTRK PAFRWLGWRG KAWSESVDLA 240 HNSNFNEPGK RKFGTDITNT SFKRSKTDFL LDGLTCKMQN QQENISYRVQ LDRSNFEKDA 300 KQTSKGYQFG PFAPAYVPKV GTSENNSGNQ VHDWDSLAQV HRPQYQNQAL RDLFSHYMDA 360 WKSWYSEVAE KKPTKTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 8e-32 | 37 | 219 | 32 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g01270.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419843.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X1 | ||||
Swissprot | Q8LSZ4 | 1e-113 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0S3RGB4 | 0.0 | A0A0S3RGB4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138128.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-116 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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