PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 208aa MW: 22452.3 Da PI: 10.0286

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g01250.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	1	37	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Vang09g01250.2 1 LFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 37 5788999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	3.22E-4	1	38	No hit	No description
SuperFamily	SSF46689	2.33E-9	1	42	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.898	1	42	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.6E-10	2	40	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.8E-5	2	37	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
LFLVGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTDS 60 VSTTPMEEGQ IQYQDNVSLV HPMYPVTPEG SNMNGFSKLP MYSKDIGTGA MSAQAGNPMK 120 ILTLGQGNVE QNGPSTKLVC TTAPNIVPDY KGSTASDITA TSLSSLDPPT LSLGLSLSSS 180 QRQTSSIHSA FHSLSCFNNG DSFITVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g01250.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017422359.1	1e-153	PREDICTED: transcription factor MYB1R1-like isoform X2
Swissprot	Q2V9B0	7e-33	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0L9UCS3	1e-151	A0A0L9UCS3_PHAAN; Uncharacterized protein
STRING	XP_007138137.1	1e-110	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-24	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]