PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g01250.2 | ||||||||
Common Name | LR48_Vigan04g055500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 22452.3 Da PI: 10.0286 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 1 | 37 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Vang09g01250.2 1 LFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 37 5788999*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 3.22E-4 | 1 | 38 | No hit | No description |
SuperFamily | SSF46689 | 2.33E-9 | 1 | 42 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.898 | 1 | 42 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.6E-10 | 2 | 40 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.8E-5 | 2 | 37 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
LFLVGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTDS 60 VSTTPMEEGQ IQYQDNVSLV HPMYPVTPEG SNMNGFSKLP MYSKDIGTGA MSAQAGNPMK 120 ILTLGQGNVE QNGPSTKLVC TTAPNIVPDY KGSTASDITA TSLSSLDPPT LSLGLSLSSS 180 QRQTSSIHSA FHSLSCFNNG DSFITVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g01250.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422359.1 | 1e-153 | PREDICTED: transcription factor MYB1R1-like isoform X2 | ||||
Swissprot | Q2V9B0 | 7e-33 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A0L9UCS3 | 1e-151 | A0A0L9UCS3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138137.1 | 1e-110 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 1e-24 | MYB_related family protein |
Publications ? help Back to Top | |||
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