PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00860.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 515aa    MW: 56427.1 Da    PI: 4.7173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-12851112551
                     HHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  25 eELSvLCdaevaviifsstgklyeyss 51 
                     +ELSvLCdaeva+iifs++gkly +ss
  Vang09g00860.1  85 YELSVLCDAEVALIIFSNRGKLYAFSS 111
                     7************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.002354112IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-87590IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-1185123IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.66685113IPR002100Transcription factor, MADS-box
PfamPF003196.3E-985109IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-890111IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.25.10.101.9E-5197258IPR011989Armadillo-like helical
CDDcd000200.00221201270No hitNo description
Gene3DG3DSA:2.20.25.106.2E-4315337No hitNo description
Gene3DG3DSA:2.20.25.101.2E-5382413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MCVAFTRKVE VSNCAKSEFK KAQSSINQYR KESFQSKKEC VFLRDVDREN RDGKREGLTE  60
EDKEQNQQAS HICQEKKWLA QQGLYELSVL CDAEVALIIF SNRGKLYAFS STSRWGTKEY  120
YLASEVSRTG VLKPEVKFKP IQLTGSILPE DLARGSSAHG EDLRRRTAFF VGGDEAISDD  180
EVEAVGEEQI GRRSSGALIG ESGAVPGLVL LLRCSDPWTQ EHAVTALKLL IKDLMSLALV  240
EENQIWALVS LLLNASHRGK NDVVQVVFSA AEQPDLGSER GGSEVVGGAS GGGKERDGGQ  300
GDGGKPSETA FFLVSSSLVP DHSTGGIICS DCGLVPDHST DDIVFSECGL VPDHSIGDIL  360
YSECGLVLES HSTSDIVFSE YDLVPDHSTG DILCSECDLV LESHSMDEIS DGRQRPQPSS  420
SLDPLATMTV TAPTQPVQPR DRWFPARQKR WWTRQRRGRS GSDNSSISLT IFVFSPTVLS  480
SPRIGLSQKE NPPWEETNVV EHELNEAECW PKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446456RQKRWWTRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-11MIKC_MADS family protein