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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vang09g00820.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
MYB |
| Protein Properties |
Length: 586aa MW: 67527 Da PI: 8.6163 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang09g00820.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 308 | 354 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT eEd ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
Vang09g00820.1 308 KGHWTIEEDGLLIQLVEQYGLRKWSHIAKILP-GRIGKQCRERWHNHL 354
789*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 360 | 402 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++ W eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
Vang09g00820.1 360 KDTWNSEEDKILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 402
678*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 586 aa
Download sequence Send
to blast |
MRKLGLWADR VTCMVRERVL GMGEERFKVK KVASWRVKQG LVGRRMTHMR KTRKRTRRMK 60
AATPMRMKRR RRWPVVEAAT TTNGGGSDDE EENYSIQCTK SSKVHCNISS QTRSFETPLL 120
FCSLLTHISM DIETLFKETF VPQPLQESCM KDMIPLGNPL SQECLQDFHH IDQFHFNVPS 180
SNNSIIQNPT FDAFDNFTFT GSSPALDVYE SKPFVENRHT HVMDNFLYGN YNLILPQRNV 240
ELDLMVADQS FLPFSPQEIK PSNFSLPDEV SCISPMNYYK RIGLNKNNKS YPTTRRTSKV 300
RKKSNTVKGH WTIEEDGLLI QLVEQYGLRK WSHIAKILPG RIGKQCRERW HNHLRPDIKK 360
DTWNSEEDKI LIEAHAEVGN KWAEIAKRLP GRTENSIKNH WNATKRRQYS KRKCRSKYPR 420
GTLLQEYIKS LNLDKNPPID YRRKSSANHA IKTSTSKSTA PALPQTASQF SAIELPPDSD 480
FNVVPDFLFG ENLLEEDCSI HSLLDGVPCV PFMDNKNCEG KLQCDPMMEG MQHFEYGGIE 540
CFAAINGDEN HVETDMQPEM LEVEVKKELD LVEMISQINS ETFHV*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 43 | 54 | RRMTHMRKTRKR |
| 2 | 49 | 57 | RKTRKRTRR |
| 3 | 52 | 71 | RKRTRRMKAATPMRMKRRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
