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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang0941s00010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
ARF |
Protein Properties |
Length: 705aa MW: 77850.4 Da PI: 7.3635 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang0941s00010.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.1 | 3.5e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +
Vang0941s00010.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--R 208
89****************************997656666..69999********************************************..4 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
+++ l+v+++r+
Vang0941s00010.1 209 AENGDLCVGIRRA 221
488999****997 PP
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2 | Auxin_resp | 110.9 | 1.3e-36 | 289 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a++k++FevvY+Pra+t+eF+vk+ ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
Vang0941s00010.1 289 AANLAANKQPFEVVYYPRACTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 372
7899******************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 705 aa
Download sequence Send
to blast |
MREMITFMDS KEKSKEAEKC LDPQLWHACA GGMVQMPAVN SKVYYFPQGH AEHACGPVHF 60 RTCPKVRPLV PCRVTAIKYM ADPDTDEVYA KLRLAPLSVN EADYDREVVG PETQDKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKKGIGGGLE GSSGWNPAGG 240 SCPMPYGGFS PFLREDDNRI LRNGNSNGLN PSVSMTGRGK VRPEAVVEAA NLAANKQPFE 300 VVYYPRACTP EFCVKAPLVE AALQIRWCSG IRFKMAFETE DSSRISWFMG TISSVQVADP 360 LNWPNSPWRL LQVTWDEPDL LQNVRRVSPW LVELVSNMPA IHLSPFSPPR KKLRLPQHPD 420 FPLEGQIPLP TFSGNLLGPS NTNQFGCLPE STPAGMQGAR HGHYGLPISD LHFSKLHSGL 480 FPAGFPPIDH AATPMRISNN QPLQKPSISE NVSCLLSMAN STPSSKKTDE GKTPQLVLFG 540 QRILTEQQIS LSSSVDTFSP VLTKICCSDG HADKVPNISD CSGSALHQQQ GLQEQRSSCE 600 RFQWYKDNPQ ETEAGLEAGH CKVFMESEDV GRTMDLSLLR SYDELYRRLA DMFGIEKSEM 660 LSQVLYRDSN GAVKHIGDEP LSDFIKSARR LTILTDSGSN NVGV*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |